Tracing the evolutionary logic of development

The EvoBlueprint Lab studies how gene regulatory networks encode mammalian development, and how evolutionary processes reshape these networks to create regulatory novelty and species-specific traits.

We bridge developmental biology, genomics and evolution to understand how genomes build complex organisms from a single cell.

Research

How does a conserved developmental toolkit give rise to diverse mammalian forms? and what role does regulatory novelty play in this process We investigate these questions at the level of gene regulatory networks.

Evolution of gene regulatory networks

We study how developmental programs are encoded in gene regulatory networks that couple transcription factors, cis regulatory elements and chromatin states. By comparing these networks across mammals, we ask how small regulatory shifts can redirect developmental trajectories and create new phenotypes.

Regulatory novelty from the dark genome

A large fraction of the genome is made of transposable element derived sequences. Many of these sequences have been co opted as promoters, enhancers and protein domains. We investigate how this rapidly evolving sequence space provides new regulatory inputs and helps rewire developmental circuits during embryogenesis.

Developmental systems viewed through evolution

We combine developmental models, stem cell systems and genomic analyses to understand how conserved processes such as gastrulation are implemented through species specific regulatory logic. This perspective links basic mechanisms of cell fate specification to broader questions in reproductive biology, evolution and disease.

We aim to move from lists of genes to mechanistic maps of how regulatory novelty is integrated into the core architecture of mammalian development.

Team

EvoBlueprint is a new research group launching in May/April 2026 in the department of Developmental biology and Stem Cells at IGBMC close to Strasbourg in France. We are currently recruiting a PhD student and a postdoctoral researcher.

Olga Rosspopoff

Olga Rosspopoff, PhD

Principal Investigator

Olga Rosspopoff is a group leader whose work focuses on how regulatory novelty is integrated into developmental gene regulatory networks. She trained in Paris on the regulation of X chromosome inactivation, then in Lausanne on the biology of transposable elements and KRAB zinc finger proteins, with a focus on mammalian embryogenesis and genome regulation.

Her research combines comparative genomics, epigenomic profiling and stem cell based models of development to understand how non coding elements and fast evolving regulators shape early human development.

Postdoctoral researchers

To be recruited

We are looking for postdoctoral researchers with strong interest in gene regulation, embryonic development or evolutionary genomics. Backgrounds in genomics, quantitative biology, computational biology or stem cell biology are particularly welcome.

PhD students

To be recruited

PhD projects in the lab will span topics such as evolution of cis regulatory landscapes, roles of transposable element derived elements in early development and integration of multiomic data into gene regulatory network models.

Selected publications

Representative work that illustrates our trajectory from cell fate plasticity and long non coding RNAs to transposable elements, KRAB zinc finger proteins and evolutionary genomics.
# First authorship ; * corresponding authorship; † Last authorship

Mix-and-match between transposable elements and zinc finger proteins fuels genic and regulatory innovation. [link]

Rosspopoff, O. #; Feschotte, C.; Trono, D.

Current Opinion in Genetics & Development, 2025.

Transposable element co-option drives transcription factor neofunctionalization. [link]

Rosspopoff, O. #*; Milovanović, D.; Offner, S.; Raclot, C.; Lau, K.; Duhoo, Y.; Duc, J.; Planet, E.; Damery, C.; Begnis, M.; Pojer, F.; Trono, D*

bioRxiv, 2025.

Tissue-specific restriction of transposon-derived regulatory elements safeguards cell-type identity. [link]

Milovanović, D.; Duc, J.; Matsushima, W.; Hamelin, R.; Planet, E.; Offner, S.; Rosspopoff, O. †*; Trono, D.†*

bioRxiv, 2025. Accepted in Cell reports.

New Ingredients for Old Recipes. [link]

Rosspopoff, O. #; Martins, F. #; Trono, D.

Nature Genetics, 2023.

Take a walk on the KRAB side [link]

Rosspopoff, O. #; Trono, D.

Trends in Genetics, 2023.

Identification of the Lipid Oxygen Radical Defense Pathway and Its Epigenetic Control. [link]

Mesquita, F. S.; Abrami, L.; Forey, R.; Kunz, B.; Raclot, C.; Bracq, L.; Martins, F.; Milovanovic, D.; Planet, E.; Rosspopoff, O.; Trono, D.; Goot, F. G. van der

Biorxiv, 2025. Accepted in Nature Communications.

Cancer Cells Subvert the Primate-Specific KRAB Zinc Finger Protein ZNF93 to Control APOBEC3B. [link]

Forey, R.; Pulver, C.; Raclot, C.; Rosspopoff, O.; Offner, S.; Duc, J.; Planet, E.; Martins, F.; Turelli, P.; Trono, D.

PNAS, 2025.

Evolutionarily Recent Transcription Factors Partake in Human Cell Cycle Regulation. [link]

Pulver, C.; Forey, R.; Lederer, A. R.; Begnis, M.; Rosspopoff, O.; Carlevaro-Fita, J.; Martins, F.; Planet, E.; Duc, J.; Raclot, C.; Offner, S.; Coudray, A.; Dorschel, A.; Trono, D.

Cell genomics, 2024.

A Cluster of Evolutionarily Recent KRAB Zinc Finger Proteins Protects Cancer Cells from Replicative Stress–Induced Inflammation. [link]

Martins, F.; Rosspopoff, O.; Carlevaro-Fita, J.; Forey, R.; Offner, S.; Planet, E.; Pulver, C.; Pak, H.; Huber, F.; Michaux, J.; Bassani-Sternberg, M.; Turelli, P.; Trono, D.

Cancer Research, 2024.

Clusters of Lineage-Specific Genes Are Anchored by ZNF274 in Repressive Perinucleolar Compartments. [link]

Begnis, M.; Duc, J.; Offner, S.; Grun, D.; Sheppard, S.; Rosspopoff, O.; Trono, D.

Science Advances, 2024.

Clock Driven Waves of Tbx6 Expression Prefigure Somite Boundaries. [link]

Venzin, O. F.; Jollivet, C.; Chiaruttini, N.; Rosspopoff, O.; Helsens, C.; Morelli, L. G.; Uriu, K.; Oates, A. C.

Biorxiv, 2023.

Species-Specific Regulation of XIST by the JPX/FTX Orthologs. [link]

Rosspopoff, O. #; Cazottes, E.; Huret, C.; Loda, A.; Collier, A. J.; Casanova, M.; Rugg-Gunn, P. J.; Heard, E.; Ouimette, J.-F.; Rougeulle, C.

Nucleic Acids Research, 2023.

A Primate-Specific Retroviral Enhancer Wires the XACT lncRNA into the Core Pluripotency Network in Humans. [link]

Casanova, M.; Moscatelli, M.; Chauvière, L. É.; Huret, C.; Samson, J.; Liyakat Ali, T. M.; Rosspopoff, O.; Rougeulle, C.

Nature Communications, 2019.

Direct conversion of root primordium into shoot meristem relies on timing of stem cell niche development

Rosspopoff, O. #; Chelysheva, L. #; Saffar, J.; Lecorgne, L.; Gey, D.; Caillieux, E.; Colot, V.; Roudier, F.; Hilson, P.; Berthomé, R.; Da Costa, M.; Rech, P. [link]

Development, 2017.

News

Highlights from the lab, including publications, talks and community activities.

UPCOMING 2026

EvoBlueprint Lab launch

The EvoBlueprint Lab will open at IGBMC in Strasbourg Illkirch and starts building a research program on regulatory evolution during mammalian embryogenesis.

2025

Our new review in Current Opinion in Genetics & Development is out !

We look at the interplay between transposable elements and Zinc Finger Proteins [link]

2025

Early career funding to support group creation

Olga Rosspopoff receives competitive funding to establish an independent research group focused on the evolution of gene regulatory networks in development at IGBMC 🇫🇷

Join the lab

We are building an interdisciplinary team that enjoys thinking across levels, from molecular mechanisms to systems level regulatory logic.

What we work on

Topics in the lab include evolution of cis regulatory landscapes, roles of transposable element derived regulatory elements and KRAB zinc finger proteins in embryogenesis, and integration of multiomic data into regulatory network models.

What we offer

We offer a collaborative environment with access to advanced genomics and imaging platforms, mentoring tailored to individual career goals and opportunities to engage with internal and international collaborators in developmental and evolutionary biology.

Who we look for

We welcome applications from people with diverse backgrounds who are curious, rigorous and excited by open questions at the interface of development, evolution and genome regulation. Both experimental and computational profiles are encouraged to get in touch.

Contact

If you are interested in joining the lab or collaborating, feel free to reach out !

Get in touch

Email: olga.rosspopoff@icloud.com

If you are enquiring about positions, please include a brief motivation letter, a CV, a short description of your background and interests, and the contact details of three referees.

Location

EvoBlueprint Lab @ IGBMC
Department of Developmental Biology and Stem Cells
Illkirch, near Strasbourg
France
[IGBMC Website]

Detailed directions and visitor information will be provided upon request.